Difference between revisions of "Sandbox"

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* '''Description:''' tRNA-Ala<br/><br/>
+
* '''Description:''' 23S rRNA<br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''trnA-Ala''
+
|''rrnA-23S''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Ala
+
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-23S
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
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|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  
 
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  
 
|-|-
 
|-|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  76 bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  2928 bp
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnA-Ile]]'', ''[[rrnA-23S]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnA-Ala]]'', ''[[rrnA-5S]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnA-Ala_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnA-23S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:trnA-Ala_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnA-23S_context.gif]]
 
|-
 
|-
 
|}
 
|}
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rrnA-16S-trnA-Ile-trnA-Ala-rrnA-23S-rrnA-5S.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rrnA-16S-trnA-Ile-trnA-Ala-rrnA-23S-rrnA-5S.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00013]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00014]
  
 
* '''Structure:'''
 
* '''Structure:'''

Revision as of 11:47, 3 March 2009

  • Description: 23S rRNA

Gene name rrnA-23S
Synonyms
Essential no
Product ribosomal RNA-23S
Function translation
Gene length
Gene length 2928 bp
Immediate neighbours trnA-Ala, rrnA-5S
Gene sequence (+200bp)
Genetic context
RrnA-23S context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]
  • Structure:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/RNA

Your additional remarks

References

  1. Ogasawara et al. (1983) Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome.Nucl. Acids Res. 11: 6301-6318. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed