Difference between revisions of "Sandbox"

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* '''Description:''' 16S rRNA<br/><br/>
+
* '''Description:''' tRNA-Ile<br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''rrnA-16S''
+
|''trnA-Ile''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' ||  
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-16S
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Ile
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' ||  
+
|style="background:#ABCDEF;" align="center"|'''Function''' || translation
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  1553 bp
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  77 bp
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bofA]]'', ''[[trnA-Ile]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnA-16S]]'', ''[[trnA-Ala]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnA-16S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnA-Ile_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnA-16S_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:trnA-Ile_context.gif]]
 
|-
 
|-
 
|}
 
|}
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rrnA-16S-trnA-Ile-trnA-Ala-rrnA-23S-rrnA-5S.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rrnA-16S-trnA-Ile-trnA-Ala-rrnA-23S-rrnA-5S.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00011]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00012]
  
 
* '''Structure:'''
 
* '''Structure:'''

Revision as of 14:17, 27 February 2009

  • Description: tRNA-Ile

Gene name trnA-Ile
Synonyms
Essential no
Product transfer RNA-Ile
Function translation
Gene length 77 bp
Immediate neighbours rrnA-16S, trnA-Ala
Gene sequence (+200bp)
Genetic context
TrnA-Ile context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]
  • Structure:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/RNA

Your additional remarks

References

  1. Ogasawara et al. (1983) Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome.Nucl. Acids Res. 11: 6301-6318. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed