Difference between revisions of "Sandbox"

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* '''Description:''' Hallo Fips!    ----- Moin Jörg ;-)---------
+
* '''Description:''' tRNA-Met
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''trnY-Lys''
+
|''trnSL-Met1''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Lys
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Met
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || kDa,  
+
  style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabR]]'', ''[[trnSL-Glu1]]''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || bp,  aa
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnSL-Met1_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnSL-Met1_protein.txt Protein sequence]'''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnY-Glu]]'', ''[[purA]]''
+
|colspan="2" | '''Genetic context''' <br/> [[Image:trnSL-Met1_context.gif]]
|-
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnY-Lys_nucleotide.txt    Gene sequence      (+200bp)  ]'''
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnY-Lys_protein.txt Protein sequence]'''
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:trnY-Lys_context.gif]]
 
 
|-
 
|-
 
|}
 
|}
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=== Database entries ===
 
=== Database entries ===
  
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnY-Lys.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnSL-Met1.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00004]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00015]
 
   
 
   
 
* '''Structure:'''  
 
* '''Structure:'''  

Revision as of 17:38, 26 February 2009

  • Description: tRNA-Met
style="background:#ABCDEF;" align="center"|Immediate neighbours || yabR, trnSL-Glu1
Gene name trnSL-Met1
Synonyms
Essential no
Product transfer RNA-Met
Function translation
Gene sequence (+200bp) Protein sequence
Genetic context
TrnSL-Met1 context.gif








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed