Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
Line 4: Line 4:
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''trnB-Lys''
+
|''trnB-Thr''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''trnE ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''trnE ''
Line 10: Line 10:
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Lys
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Thr
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
Line 18: Line 18:
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' ||  bp,  aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' ||  bp,  aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnB-Leu1]]'', ''[[trnB-Thr]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnB-Lys]]'', ''[[trnB-Val]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnB-Lys_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnB-Thr_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnB-Lys_protein.txt Protein sequence]'''
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnB-Thr_protein.txt Protein sequence]'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:trnB-Lys_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:trnB-Thr_context.gif]]
 
|-
 
|-
 
|}
 
|}
Line 42: Line 42:
 
=== Database entries ===
 
=== Database entries ===
  
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnB-Lys.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnB-Thr.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00076]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00075]
 
   
 
   
 
* '''Structure:'''  
 
* '''Structure:'''  

Revision as of 12:54, 25 February 2009

  • Description: write here

Gene name trnB-Thr
Synonyms trnE
Essential no
Product transfer RNA-Thr
Function translation
MW, pI kDa,
Gene length, protein length bp, aa
Immediate neighbours trnB-Lys, trnB-Val
Gene sequence (+200bp) Protein sequence
Genetic context
TrnB-Thr context.gif








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed