Difference between revisions of "YkoY"

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(Expression and regulation)
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* '''Description:''' similar to toxic anion resistance protein <br/><br/>
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* '''Description:''' membrane protein, may be involved in manganese detoxification<br/><br/>
  
 
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{| align="right" border="1" cellpadding="2"  
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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[sporulation proteins]]}}
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{{SubtiWiki category|[[sporulation proteins]]}},
 +
{{SubtiWiki category|[[membrane proteins]]}}
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=

Revision as of 17:45, 26 March 2015

  • Description: membrane protein, may be involved in manganese detoxification

Gene name ykoY
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ykoY
MW, pI 35 kDa, 9.731
Gene length, protein length 972 bp, 324 aa
Immediate neighbours ykoX, sigI
Sequences Protein DNA DNA_with_flanks
Genetic context
YkoY context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkoY expression.png















Categories containing this gene/protein

sporulation proteins, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU13440

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ian R Price, Ahmed Gaballa, Fang Ding, John D Helmann, Ailong Ke
Mn(2+)-sensing mechanisms of yybP-ykoY orphan riboswitches.
Mol Cell: 2015, 57(6);1110-1123
[PubMed:25794619] [WorldCat.org] [DOI] (I p)

Michael Dambach, Melissa Sandoval, Taylor B Updegrove, Vivek Anantharaman, L Aravind, Lauren S Waters, Gisela Storz
The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element.
Mol Cell: 2015, 57(6);1099-1109
[PubMed:25794618] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A: 2004, 101(17);6421-6
[PubMed:15096624] [WorldCat.org] [DOI] (P p)