Difference between revisions of "Rtp"

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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
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** binds to nine termination sites spanning ∼430 kb of the replication terminus region {{PubMed|9642188}}
  
* '''Protein family:''' pyrroline-5-carboxylate reductase family (according to Swiss-Prot)
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* '''Protein family:'''
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
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=References=
 
=References=
  
<pubmed>7746150,10209741, 19820088, 2498294 2115089 1784827 7934839 </pubmed>
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<pubmed>7746150,10209741, 19820088, 2498294 2115089 1784827 7934839 9642188 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 11:29, 30 July 2014

  • Description: replication terminator protein

Gene name rtp
Synonyms
Essential no
Product replication terminator protein
Function replication termination
Gene expression levels in SubtiExpress: rtp
MW, pI 14 kDa, 9.778
Gene length, protein length 366 bp, 122 aa
Immediate neighbours proH, yoxD
Sequences Protein DNA DNA_with_flanks
Genetic context
Rtp context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Rtp expression.png















Categories containing this gene/protein

DNA replication

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU18490

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • binds to nine termination sites spanning ∼430 kb of the replication terminus region PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1F4K (complex with DNA), 1BM9
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • number of protein molecules per cell (complex medium with amino acids, without glucose): 50 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Qiaojuan Shi, Jose C Huguet-Tapia, Joseph E Peters
Tn917 targets the region where DNA replication terminates in Bacillus subtilis, highlighting a difference in chromosome processing in the firmicutes.
J Bacteriol: 2009, 191(24);7623-7
[PubMed:19820088] [WorldCat.org] [DOI] (I p)

S Autret, A Levine, F Vannier, Y Fujita, S J Séror
The replication checkpoint control in Bacillus subtilis: identification of a novel RTP-binding sequence essential for the replication fork arrest after induction of the stringent response.
Mol Microbiol: 1999, 31(6);1665-79
[PubMed:10209741] [WorldCat.org] [DOI] (P p)

A A Griffiths, P A Andersen, R G Wake
Replication terminator protein-based replication fork-arrest systems in various Bacillus species.
J Bacteriol: 1998, 180(13);3360-7
[PubMed:9642188] [WorldCat.org] [DOI] (P p)

A Levine, S Autret, S J Séror
A checkpoint involving RTP, the replication terminator protein, arrests replication downstream of the origin during the Stringent Response in Bacillus subtilis.
Mol Microbiol: 1995, 15(2);287-95
[PubMed:7746150] [WorldCat.org] [DOI] (P p)

D B Langley, M T Smith, P J Lewis, R G Wake
Protein-nucleoside contacts in the interaction between the replication terminator protein of Bacillus subtilis and the DNA terminator.
Mol Microbiol: 1993, 10(4);771-9
[PubMed:7934839] [WorldCat.org] [DOI] (P p)

P J Lewis, R G Wake
Termination of chromosome replication in Bacillus subtilis.
Res Microbiol: 1991, 142(7-8);893-900
[PubMed:1784827] [WorldCat.org] [DOI] (P p)

P J Lewis, G B Ralston, R I Christopherson, R G Wake
Identification of the replication terminator protein binding sites in the terminus region of the Bacillus subtilis chromosome and stoichiometry of the binding.
J Mol Biol: 1990, 214(1);73-84
[PubMed:2115089] [WorldCat.org] [DOI] (P p)

P J Lewis, M T Smith, R G Wake
A protein involved in termination of chromosome replication in Bacillus subtilis binds specifically to the terC site.
J Bacteriol: 1989, 171(6);3564-7
[PubMed:2498294] [WorldCat.org] [DOI] (P p)