Difference between revisions of "SpsJ"
| Line 42: | Line 42: | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | {{SubtiWiki regulon|[[ | + | {{SubtiWiki regulon|[[GerE regulon]]}}, |
{{SubtiWiki regulon|[[SigK regulon]]}} | {{SubtiWiki regulon|[[SigK regulon]]}} | ||
| Line 108: | Line 108: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spsJ_3884292_3885239_-1 spsJ] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spsJ_3884292_3885239_-1 spsJ] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigK]] {{PubMed|15383836}} | + | * '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15383836}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** expressed late during sporulation in the mother cell ([[SigK]]) {{PubMed|15383836}} | + | ** expressed late during sporulation in the mother cell ([[SigK]], [[GerE]]) {{PubMed|25239894,15383836}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[GerE]]: transcription activation {{PubMed|25239894,15383836}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 136: | Line 137: | ||
=References= | =References= | ||
| − | <pubmed>9353933 15383836 22960854 </pubmed> | + | <pubmed>9353933 15383836 22960854 25239894</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:35, 23 September 2014
- Description: dTDP -glucose-4,6-dehydratase, spore coat polysaccharide synthesis
| Gene name | spsJ |
| Synonyms | ipa-72d |
| Essential | no |
| Product | dTDP -glucose-4,6-dehydratase |
| Function | rhamnose biosynthesis, spore coat polysaccharide synthesis |
| Gene expression levels in SubtiExpress: spsJ | |
| MW, pI | 35 kDa, 6.286 |
| Gene length, protein length | 945 bp, 315 aa |
| Immediate neighbours | spsK, spsI |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
miscellaneous metabolic pathways, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU37830
Phenotypes of a mutant
Database entries
- BsubCyc: BSU37830
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- dTDP-glucose --> dTDP-4-dehydro-6-deoxyglucose PubMed
- Protein family: sugar epimerase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU37830
- Structure:
- UniProt: P39630
- KEGG entry: [3]
- E.C. number: 4.2.1.46
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
