yvdD

168

putative lysine decarboxylase

Locus: BSU_34640

Molecular weight: 20.91 kDa

Isoelectric point: 5.09

Protein length: 191 aa

Gene length: 576 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: yvdD

Genomic Context

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List of homologs in different organisms, belongs to COG1611 (Galperin et al., 2021)

Gene

Coordinates: 3,558,940 → 3,559,515

The protein

Protein family

• LOG family (single member, according to UniProt)

Structure

• 1T35 (PDB)
• O06986 (AlphaFold)

Additional information

• Detected in spores. PubMed

Expression and Regulation

Operons

• Genes: yvdD

  Description: PubMed

  Additional information

  • Putative NrdR-box located between YvdC and YvdD, suggesting transcriptional regulation by NrdR (YtcG). PubMed

Biological materials

Mutant

• MGNA-B629 (yvdD::erm), available at the NBRP B. subtilis, Japan
• BKE34640 (ΔyvdD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTTGTCATCTCCGCATC,  downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT
• BKK34640 (ΔyvdD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTTGTCATCTCCGCATC,  downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT

References

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