Difference between revisions of "GerPF"

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(Expression and regulation)
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[gerPA]]-[[gerPB]]-[[gerPC]]-[[gerPD]]-[[gerPE]]-[[gerPF]]'' (according to [http://dbtbs.hgc.jp/COG/prom/gerPABCDEF.html DBTBS])
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* '''Operon:''' ''[[gerPA]]-[[gerPB]]-[[gerPC]]-[[gerPD]]-[[gerPE]]-[[gerPF]]'' {{PubMed|22383849}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerPF_1148494_1148721_-1 gerPF] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerPF_1148494_1148721_-1 gerPF] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigK]] {{PubMed|15699190}}
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* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
** expressed during sporulation in the mother cell ([[SigK]]) {{PubMed|15699190,10715007}}
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** expressed during [[sporulation]] in the mother cell ([[SigK]]) {{PubMed|15699190,10715007}}
** subject to negative regulation by GerE {{PubMed|10715007}}
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** subject to negative regulation by [[GerE]] {{PubMed|10715007}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  

Revision as of 13:55, 6 April 2015

  • Description: spore germination protein, facilitates access of nutrient germinants to their cognate germinant receptors in spores’ inner membrane

Gene name gerPF
Synonyms yisC
Essential no
Product unknown
Function germination
Gene expression levels in SubtiExpress: gerPF
MW, pI 7 kDa, 3.621
Gene length, protein length 225 bp, 75 aa
Immediate neighbours hlpB, gerPE
Sequences Protein DNA DNA_with_flanks
Genetic context
GerPF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GerPF expression.png















Categories containing this gene/protein

germination

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU10670

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: gerPA/gerPF family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

J Behravan, H Chirakkal, A Masson, A Moir
Mutations in the gerP locus of Bacillus subtilis and Bacillus cereus affect access of germinants to their targets in spores.
J Bacteriol: 2000, 182(7);1987-94
[PubMed:10715007] [WorldCat.org] [DOI] (P p)