Difference between revisions of "YdaF"

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* '''Additional information:'''
 
* '''Additional information:'''
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** number of protein molecules per cell (minimal medium with glucose and ammonium): 126 {{PubMed|24696501}}
  
 
=Biological materials =
 
=Biological materials =

Revision as of 10:03, 17 April 2014

  • Description: similar to acetyltransferase

Gene name ydaF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydaF
MW, pI 20 kDa, 5.564
Gene length, protein length 549 bp, 183 aa
Immediate neighbours ydaE, ydaG
Sequences Protein DNA DNA_with_flanks
Genetic context
YdaF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdaF expression.png















Categories containing this gene/protein

general stress proteins (controlled by SigB), poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU04210

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: N-acetyltransferase domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 126 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)

Joseph S Brunzelle, Ruiying Wu, Sergey V Korolev, Frank R Collart, Andrzej Joachimiak, Wayne F Anderson
Crystal structure of Bacillus subtilis YdaF protein: a putative ribosomal N-acetyltransferase.
Proteins: 2004, 57(4);850-3
[PubMed:15468321] [WorldCat.org] [DOI] (I p)

Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166] [WorldCat.org] [DOI] (P p)