Difference between revisions of "SpeD"
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− | * '''Description:''' S-adenosylmethionine decarboxylase <br/><br/> | + | * '''Description:''' S-adenosylmethionine decarboxylase, required for [[biofilm formation]] <br/><br/> |
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
− | {{SubtiWiki category|[[miscellaneous metabolic pathways]]}} | + | {{SubtiWiki category|[[miscellaneous metabolic pathways]]}}, |
+ | {{SubtiWiki category|[[biofilm formation]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
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===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
+ | * no [[biofilm formation]] {{PubMed|24529384}} | ||
=== Database entries === | === Database entries === |
Revision as of 18:16, 28 February 2014
- Description: S-adenosylmethionine decarboxylase, required for biofilm formation
Gene name | speD |
Synonyms | ytcF |
Essential | no |
Product | S-adenosylmethionine decarboxylase |
Function | spermidine, polyamine biosynthesis |
Gene expression levels in SubtiExpress: speD | |
Metabolic function and regulation of this protein in SubtiPathways: speD | |
MW, pI | 13 kDa, 4.768 |
Gene length, protein length | 384 bp, 128 aa |
Immediate neighbours | ytcG, gapB |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
miscellaneous metabolic pathways, biofilm formation
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU29010
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl)-methylsulfonium salt + CO2 (according to Swiss-Prot)
- Protein family: Type 1 subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 1VR7 (from Thermotoga maritima, 47% identity, 72% similarity)
- UniProt: O34426
- KEGG entry: [3]
- E.C. number: 4.1.1.50
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References