Difference between revisions of "Rpe"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15790&redirect=T BSU15790]
  
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15790&redirect=T BSU15790]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1tqj 1TQJ] (from ''Synechocystis sp.'', 61% identity, 75% similarity) {{PubMed|15333955}}
 
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1tqj 1TQJ] (from ''Synechocystis sp.'', 61% identity, 75% similarity) {{PubMed|15333955}}

Revision as of 13:41, 2 April 2014

  • Description: ribulose 5-phosphate 3-epimerase

Gene name rpe
Synonyms yloR
Essential no
Product ribulose 5-phosphate 3-epimerase
Function pentose phosphate pathway
Gene expression levels in SubtiExpress: rpe
Metabolic function and regulation of this protein in SubtiPathways:
rpe
MW, pI 23 kDa, 5.651
Gene length, protein length 651 bp, 217 aa
Immediate neighbours cpgA, yloS
Sequences Protein DNA DNA_with_flanks
Genetic context
Rpe context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Rpe expression.png




























Categories containing this gene/protein

carbon core metabolism

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU15790

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: D-ribulose 5-phosphate = D-xylulose 5-phosphate (according to Swiss-Prot)
  • Protein family: ribulose-phosphate 3-epimerase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1TQJ (from Synechocystis sp., 61% identity, 75% similarity) PubMed
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:
  • FLAG-tag construct: GP1405 (spc, based on pGP1331), available in the Stülke lab

Labs working on this gene/protein

Your additional remarks

References