Difference between revisions of "YcxD"

From SubtiWiki
Jump to: navigation, search
(Extended information on the protein)
Line 1: Line 1:
* '''Description:''' similar to transcriptional regulator (MocR/GabR family) <br/><br/>
+
* '''Description:''' similar to transcriptional regulator (MocR/ GabR family) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 72: Line 72:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:''' MocR/GabR family [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed]
+
* '''Protein family:''' MocR/ GabR family [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed]
  
* '''Paralogous protein(s):''' none, but there are 7 members of the MocR/GabR family in ''B. subtilis''
+
* '''Paralogous protein(s):''' none, but there are 7 members of the MocR/ GabR family in ''B. subtilis''
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===

Revision as of 16:08, 21 November 2013

  • Description: similar to transcriptional regulator (MocR/ GabR family)

Gene name ycxD
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ycxD
MW, pI 50 kDa, 8.567
Gene length, protein length 1332 bp, 444 aa
Immediate neighbours ycxC, sfp/1
Sequences Protein DNA DNA_with_flanks
Genetic context
YcxD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcxD expression.png
























Categories containing this gene/protein

transcription factors and their control

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU03560

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: MocR/ GabR family PubMed
  • Paralogous protein(s): none, but there are 7 members of the MocR/ GabR family in B. subtilis

Extended information on the protein

  • Kinetic information:
  • Domains: N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References