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− | * '''Description:''' repair, recombination <br/><br/>
| + | #REDIRECT [[RemB]] |
− | {| align="right" border="1" cellpadding="2"
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− | |style="background:#ABCDEF;" align="center"|'''Gene name'''
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− | |''recF''
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Essential''' ||
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Product''' || unknown
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− | |-
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− | |style="background:#ABCDEF;" align="center"|'''Function''' || repair, recombination
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− | |-
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− | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00040 RecF]
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 7.015
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− | |-
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− | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1110 bp, 370 aa
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− | |-
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− | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaA]]'', ''[[yaaB]]''
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− | |-
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− | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00040 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00040 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00040 DNA_with_flanks]
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− | |colspan="2" | '''Genetic context''' <br/> [[Image:DnaA_dnaN_yaaA_recF_yaaB_gyrB_context.png]]
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− | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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− | |-
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− | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recF_3437_4549_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:recF_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00040]]
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− | |-
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− | |}
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− | | |
− | __TOC__
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− | <br/><br/><br/><br/>
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− | <br/><br/><br/><br/>
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− | <br/><br/><br/><br/>
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− | <br/><br/><br/><br/>
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− | <br/><br/><br/><br/>
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− | | |
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− | <br/><br/>
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− | | |
− | = [[Categories]] containing this gene/protein =
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− | {{SubtiWiki category|[[DNA repair/ recombination]]}}
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− | | |
− | = This gene is a member of the following [[regulons]] =
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− | | |
− | | |
− | =The gene=
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− | | |
− | === Basic information ===
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− | * '''Locus tag:''' BSU00040
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− | | |
− | ===Phenotypes of a mutant ===
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− | | |
− | === Database entries ===
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− | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaA-recF-yaaB-gyrB.html]
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− | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10068]
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− | | |
− | === Additional information===
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− | | |
− | =The protein=
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− | | |
− | === Basic information/ Evolution ===
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− | * '''Catalyzed reaction/ biological activity:'''
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− | * '''Protein family:''' recF family (according to Swiss-Prot)
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− | | |
− | * '''Paralogous protein(s):'''
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− | | |
− | === Extended information on the protein ===
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− | * '''Kinetic information:'''
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− | * '''Domains:'''
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− | * '''Modification:'''
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− | * '''Cofactor(s):'''
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− | * '''Effectors of protein activity:'''
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− | * '''[[SubtInteract|Interactions]]:'''
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− | * '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
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− | | |
− | === Database entries ===
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− | * '''Structure:'''
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− | * '''UniProt:''' [http://www.uniprot.org/uniprot/P05651 P05651]
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− | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00040]
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− | * '''E.C. number:'''
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− | | |
− | === Additional information===
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− | =Expression and regulation=
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− | * '''Operon:''' ''[[yaaA]]-[[recF]]-[[yaaB]]-[[gyrB]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
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− | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recF_3437_4549_1 recF] {{PubMed|22383849}}
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− | * '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
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− | * '''Regulation:'''
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− | * '''Regulatory mechanism:'''
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− | * '''Additional information:'''
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− | =Biological materials =
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− | * '''Mutant:'''
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− | * '''Expression vector:'''
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− |
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− | * '''lacZ fusion:'''
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− | * '''GFP fusion:'''
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− | * '''two-hybrid system:'''
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− | * '''Antibody:'''
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− | =Labs working on this gene/protein=
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− | =Your additional remarks=
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− | =References=
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− | == Reviews ==
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− | <pubmed> 22933559 </pubmed>
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− | == Original publications ==
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− | <pubmed>2987848, 15186413 9207023 </pubmed>
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− | [[Category:Protein-coding genes]] | |