Difference between revisions of "YqeI"
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU25650&redirect=T BSU25650] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
| Line 89: | Line 90: | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU25650&redirect=T BSU25650] | ||
* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=1LN4 1LN4] (the YhbY protein of E. coli, 41% identity, 62% similarity) {{PubMed|12429100}} | * '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=1LN4 1LN4] (the YhbY protein of E. coli, 41% identity, 62% similarity) {{PubMed|12429100}} | ||
Revision as of 14:16, 2 April 2014
- Description: similar to predicted RNA-binding protein, may be involved in ribosome assembly
| Gene name | yqeI |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yqeI | |
| MW, pI | 10 kDa, 9.476 |
| Gene length, protein length | 288 bp, 96 aa |
| Immediate neighbours | nadD, aroD |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU25650
Phenotypes of a mutant
Database entries
- BsubCyc: BSU25650
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
- the protein is enriched in 45S assembly intermediates that accumulate upon depletion of RbgA PubMed
- The E. coli homolog: yhbY
- The homolog from E. coli associates to the 50S subunit of the ribosome and is involved in ribosome assembly Ecocyc
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU25650
- UniProt: P54454
- KEGG entry: [2]
- E.C. number:
Additional information
- YqeI might be a RNA-binding protein PubMed
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Ningning Li, Yuling Chen, Qiang Guo, Yixiao Zhang, Yi Yuan, Chengying Ma, Haiteng Deng, Jianlin Lei, Ning Gao
Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit.
Nucleic Acids Res: 2013, 41(14);7073-83
[PubMed:23700310]
[WorldCat.org]
[DOI]
(I p)
Alison Hunt, Joy P Rawlins, Helena B Thomaides, Jeff Errington
Functional analysis of 11 putative essential genes in Bacillus subtilis.
Microbiology (Reading): 2006, 152(Pt 10);2895-2907
[PubMed:17005971]
[WorldCat.org]
[DOI]
(P p)
Gerard J Ostheimer, Alice Barkan, Brian W Matthews
Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins.
Structure: 2002, 10(11);1593-601
[PubMed:12429100]
[WorldCat.org]
[DOI]
(P p)
