Difference between revisions of "YdaK"

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(Biological materials)
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=Biological materials =
 
=Biological materials =
  
* '''Mutant:'''
+
* '''Mutant:''' GP1592 (kan) available in [[Stülke]] lab
  
 
* '''Expression vector:'''
 
* '''Expression vector:'''

Revision as of 11:40, 13 August 2013

  • Description: general stress protein, may act as c-di-GMP receptor

Gene name ydaK
Synonyms
Essential no
Product general stress protein
Function unknown
Gene expression levels in SubtiExpress: ydaK
MW, pI 32 kDa, 6.695
Gene length, protein length 849 bp, 283 aa
Immediate neighbours ydaJ, ydaL
Sequences Protein DNA DNA_with_flanks
Genetic context
YdaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdaK expression.png















Categories containing this gene/protein

general stress proteins (controlled by SigB)


This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU04280

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
    • contains a C-terminal degenerated GGDEF domain PubMed
  • Modification:
  • Cofactor(s):
    • binds c-di-GPM at high concentration (K(D) for c-di-GMP: 1.1 myM) PubMed
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant: GP1592 (kan) available in Stülke lab
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References