Difference between revisions of "LigD"
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|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''ligD'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ykoU'' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || non-homologous end joining DNA repair | |style="background:#ABCDEF;" align="center"|'''Function''' || non-homologous end joining DNA repair | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13400 | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13400 ligD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 70 kDa, 6.646 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 70 kDa, 6.646 | ||
| Line 105: | Line 105: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[ykoV]]-[[ | + | * '''Operon:''' ''[[ykoV]]-[[ligD]]'' {{PubMed|16497325}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykoU_1404518_1406353_-1 ykoU] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykoU_1404518_1406353_-1 ykoU] {{PubMed|22383849}} | ||
Revision as of 11:04, 23 May 2013
- Description: confers dry-heat resistance to dormant spores PubMed, similar to ATP-dependent DNA ligase
| Gene name | ligD |
| Synonyms | ykoU |
| Essential | no |
| Product | unknown |
| Function | non-homologous end joining DNA repair |
| Gene expression levels in SubtiExpress: ligD | |
| MW, pI | 70 kDa, 6.646 |
| Gene length, protein length | 1833 bp, 611 aa |
| Immediate neighbours | ykoT, ykoV |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
DNA repair/ recombination, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU13400
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains: C-terminal DNA ligase catalytic domain linked to an N-terminal polymerase domain PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34398
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- expressed during sporulation in the forespore (SigG, SpoVT) PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Original publications
