Difference between revisions of "YlyA"
| Line 1: | Line 1: | ||
| − | * '''Description:''' [[ | + | * '''Description:''' modulator of [[SigG]]-containing [[RNA polymerase]] <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || [[ | + | |style="background:#ABCDEF;" align="center"| '''Product''' || modulator of [[SigG]]-containing [[RNA polymerase]] |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigG]]-dependent transcription |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15440 ylyA] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15440 ylyA] | ||
| Line 72: | Line 72: | ||
* '''Protein family:''' | * '''Protein family:''' | ||
| − | * '''Paralogous protein(s):''' [[YteA]] | + | * '''Paralogous protein(s):''' [[YteA]], [[YocK]] |
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 87: | Line 87: | ||
* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
| − | + | * [[YlyA]]-core [[RNA polymerase]] {{PubMed|23678950}} | |
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
** located at the cell periphery {{PubMed|18720851}} | ** located at the cell periphery {{PubMed|18720851}} | ||
| Line 109: | Line 109: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylyA_1616267_1616641_1 ylyA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylyA_1616267_1616641_1 ylyA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigG]] {{PubMed|23123912}} | + | * '''[[Sigma factor]]:''' [[SigG]] {{PubMed|23123912}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 139: | Line 139: | ||
=References= | =References= | ||
| − | <pubmed> 23123912 18720851 22383849</pubmed> | + | <pubmed> 23123912 18720851 22383849 23678950 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 17:22, 24 May 2013
- Description: modulator of SigG-containing RNA polymerase
| Gene name | ylyA |
| Synonyms | ylmK |
| Essential | no |
| Product | modulator of SigG-containing RNA polymerase |
| Function | control of SigG-dependent transcription |
| Gene expression levels in SubtiExpress: ylyA | |
| MW, pI | 16 kDa, 5.789 |
| Gene length, protein length | 441 bp, 147 aa |
| Immediate neighbours | ileS, lspA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU15440
Phenotypes of a mutant
- defective in spore germination efficiency PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- YlyA-core RNA polymerase PubMed
- Localization:
- located at the cell periphery PubMed
Database entries
- Structure:
- UniProt: Q45478
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- expressed late during sporulation in the forespore (SigG, SpoVT) PubMed
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Bjorn A Traag, Arturo Ramirez-Peralta, Anna F Wang Erickson, Peter Setlow, Richard Losick
A novel RNA polymerase-binding protein controlling genes involved in spore germination in Bacillus subtilis.
Mol Microbiol: 2013, 89(1);113-22
[PubMed:23678950]
[WorldCat.org]
[DOI]
(I p)
Bjorn A Traag, Antonia Pugliese, Jonathan A Eisen, Richard Losick
Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.
J Bacteriol: 2013, 195(2);253-60
[PubMed:23123912]
[WorldCat.org]
[DOI]
(I p)
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
Nairui Huo, Peter J Lewis
[Green fluorescent protein labeling of ylyA gene in Bacillus subtilis].
Wei Sheng Wu Xue Bao: 2008, 48(6);829-33
[PubMed:18720851]
[WorldCat.org]
(P p)
