Difference between revisions of "YjdI"

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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
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* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
* '''Cofactor(s):'''
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* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjdI_1277686_1278165_1 yjdI] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjdI_1277686_1278165_1 yjdI] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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=References=
 
=References=
<pubmed> 15886196 14530268 16087664 </pubmed>
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<pubmed> 15886196 14530268 16087664 24371276 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 14:20, 30 December 2013

  • Description: similiar to Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase

Gene name yjdI
Synonyms
Essential no
Product Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase
Function maturation of tRNA
Gene expression levels in SubtiExpress: yjdI
MW, pI 17 kDa, 8.755
Gene length, protein length 477 bp, 159 aa
Immediate neighbours yjdH, yjzH
Sequences Protein DNA DNA_with_flanks
Genetic context
YjdI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjdI expression.png















Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU12060

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

E. coli homolog: [2]

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Mom Das, Oscar Vargas-Rodriguez, Yuki Goto, Hiroaki Suga, Karin Musier-Forsyth
Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation.
Nucleic Acids Res: 2014, 42(6);3943-53
[PubMed:24371276] [WorldCat.org] [DOI] (I p)

Songon An, Karin Musier-Forsyth
Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex.
J Biol Chem: 2005, 280(41);34465-72
[PubMed:16087664] [WorldCat.org] [DOI] (P p)

Benfang Ruan, Dieter Söll
The bacterial YbaK protein is a Cys-tRNAPro and Cys-tRNA Cys deacylase.
J Biol Chem: 2005, 280(27);25887-91
[PubMed:15886196] [WorldCat.org] [DOI] (P p)

Fai-Chu Wong, Penny J Beuning, Carmen Silvers, Karin Musier-Forsyth
An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing.
J Biol Chem: 2003, 278(52);52857-64
[PubMed:14530268] [WorldCat.org] [DOI] (P p)