Difference between revisions of "SasB"
| Line 49: | Line 49: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * a ''[[relA]] [[yjbM]] [[ywaC]]'' triple mutant requires branched chain amino acids, methionine and threonine for growth, the requirement can be suppressed by reduced expression of ''[[guaB]]'' or inactivation of ''[[codY]]'' {{PubMed|24163341}} | ||
=== Database entries === | === Database entries === | ||
| Line 73: | Line 74: | ||
* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' single ppGpp synthetase domain {{PubMed|24163341}} |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| Line 103: | Line 104: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjbM_1237006_1237641_1 yjbM] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjbM_1237006_1237641_1 yjbM] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' expressed during exponential growth | * '''Regulation:''' expressed during exponential growth | ||
| Line 130: | Line 131: | ||
=References= | =References= | ||
| − | + | <pubmed>22950019 18670626 19447912 18067544 24163341</pubmed> | |
| − | <pubmed> 18670626 19447912 18067544 </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:46, 22 December 2013
- Description: (p)ppGpp synthetase
| Gene name | yjbM |
| Synonyms | |
| Essential | no |
| Product | (p)ppGpp synthetase |
| Function | ppGpp synthesis independent from stringent response |
| Gene expression levels in SubtiExpress: yjbM | |
| MW, pI | 24 kDa, 6.708 |
| Gene length, protein length | 633 bp, 211 aa |
| Immediate neighbours | yjbL, nadF |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
metabolism of signalling nucleotides
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU11600
Phenotypes of a mutant
- a relA yjbM ywaC triple mutant requires branched chain amino acids, methionine and threonine for growth, the requirement can be suppressed by reduced expression of guaB or inactivation of codY PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): YwaC
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31611
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation: expressed during exponential growth
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
