Difference between revisions of "YcsE"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04040&redirect=T BSU04040]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ycsE.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ycsE.html]
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04040&redirect=T BSU04040]
  
 
* '''Structure:'''
 
* '''Structure:'''

Revision as of 13:00, 2 April 2014

  • Description: similar to E.coli sugar phosphatase

Gene name ycsE
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ycsE
MW, pI 27 kDa, 4.485
Gene length, protein length 747 bp, 249 aa
Immediate neighbours yczO, ycsF
Sequences Protein DNA DNA_with_flanks
Genetic context
YcsE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcsE expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU04040

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

  • The E.coli homolog: yidA

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: Cof family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: ycsE (according to DBTBS)
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ekaterina Kuznetsova, Michael Proudfoot, Claudio F Gonzalez, Greg Brown, Marina V Omelchenko, Ivan Borozan, Liran Carmel, Yuri I Wolf, Hirotada Mori, Alexei V Savchenko, Cheryl H Arrowsmith, Eugene V Koonin, Aled M Edwards, Alexander F Yakunin
Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family.
J Biol Chem: 2006, 281(47);36149-61
[PubMed:16990279] [WorldCat.org] [DOI] (P p)