Difference between revisions of "YbfK"
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
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=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId= | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=4CCY 4CCY] {{PubMed|24418394}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31452 O31452] | * '''UniProt:''' [http://www.uniprot.org/uniprot/O31452 O31452] | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybfK_246658_247548_1 ybfK] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybfK_246658_247548_1 ybfK] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
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[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 08:54, 16 January 2014
- Description: carboxylesterase NP
| Gene name | ybfK |
| Synonyms | cesB |
| Essential | no |
| Product | carboxylesterase NP |
| Function | degradation of isoprenoid-containing lipids |
| Gene expression levels in SubtiExpress: ybfK | |
| MW, pI | 32 kDa, 5.135 |
| Gene length, protein length | 888 bp, 296 aa |
| Immediate neighbours | ybfJ, pssA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU02260
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: A carboxylic ester + H2O = an alcohol + a carboxylate (according to Swiss-Prot)
- Protein family: AB hydrolase superfamily (according to Swiss-Prot)
- Paralogous protein(s): Nap
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
- Interactions:
- Localization:
- cytoplasm (according to Swiss-Prot)
Database entries
- UniProt: O31452
- KEGG entry: [2]
- E.C. number: 3.1.1.1
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Henriëtte J Rozeboom, Luis F Godinho, Marco Nardini, Wim J Quax, Bauke W Dijkstra
Crystal structures of two Bacillus carboxylesterases with different enantioselectivities.
Biochim Biophys Acta: 2014, 1844(3);567-75
[PubMed:24418394]
[WorldCat.org]
[DOI]
(P p)
M J Dröge, R Bos, W J Quax
Paralogous gene analysis reveals a highly enantioselective 1,2-O-isopropylideneglycerol caprylate esterase of Bacillus subtilis.
Eur J Biochem: 2001, 268(11);3332-8
[PubMed:11389736]
[WorldCat.org]
[DOI]
(P p)
