Difference between revisions of "YbaK"

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Revision as of 12:24, 16 May 2013

  • Description: sporulation protein

Gene name ybaK
Synonyms ybxH
Essential no
Product sporulation protein
Function unknown
Gene expression levels in SubtiExpress: ybaK
MW, pI 17 kDa, 5
Gene length, protein length 441 bp, 147 aa
Immediate neighbours ybaJ, cwlD
Sequences Protein DNA DNA_with_flanks
Genetic context
YbaK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbaK expression.png
























Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

LexA regulon, SigG regulon

The gene

Basic information

  • Locus tag: BSU01520

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: expressed during sporulation (SigG) PubMed
    • repressed when no DNA damage is present (LexA) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Nora Au, Elke Kuester-Schoeck, Veena Mandava, Laura E Bothwell, Susan P Canny, Karen Chachu, Sierra A Colavito, Shakierah N Fuller, Eli S Groban, Laura A Hensley, Theresa C O'Brien, Amish Shah, Jessica T Tierney, Louise L Tomm, Thomas M O'Gara, Alexi I Goranov, Alan D Grossman, Charles M Lovett
Genetic composition of the Bacillus subtilis SOS system.
J Bacteriol: 2005, 187(22);7655-66
[PubMed:16267290] [WorldCat.org] [DOI] (P p)

J Sekiguchi, K Akeo, H Yamamoto, F K Khasanov, J C Alonso, A Kuroda
Nucleotide sequence and regulation of a new putative cell wall hydrolase gene, cwlD, which affects germination in Bacillus subtilis.
J Bacteriol: 1995, 177(19);5582-9
[PubMed:7559346] [WorldCat.org] [DOI] (P p)