Difference between revisions of "OpuCB"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[opuCC]]'', ''[[opuCA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[opuCC]]'', ''[[opuCA]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33820 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33820 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:opuCB_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:opuCB_context.gif]]

Revision as of 11:17, 14 May 2013

Gene name opuCB
Synonyms yvbD
Essential no
Product glycine betaine/carnitine/choline ABC transporter
Function compatible solute transport
Gene expression levels in SubtiExpress: opuCB
Interactions involving this protein in SubtInteract: OpuCB
Metabolic function and regulation of this protein in SubtiPathways:
Stress
MW, pI 23 kDa, 9.705
Gene length, protein length 651 bp, 217 aa
Immediate neighbours opuCC, opuCA
Sequences Protein DNA DNA_with_flanks
Genetic context
OpuCB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
OpuCB expression.png




























Categories containing this gene/protein

ABC transporters, coping with hyper-osmotic stress, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU33820

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: CysTW subfamily (according to Swiss-Prot)
  • Paralogous protein(s): OpuBB

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • induced by salt stress PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References