Difference between revisions of "SdaAA"

From SubtiWiki
Jump to: navigation, search
Line 24: Line 24:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sdaAB]]'', ''[[recG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sdaAB]]'', ''[[recG]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15860 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15860 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:sdaAA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:sdaAA_context.gif]]

Revision as of 10:12, 14 May 2013

  • Description: L-serine deaminase

Gene name sdaAA
Synonyms ylpA, sdaA
Essential no
Product L-serine deaminase (alpha chain)
Function serine utilization
Gene expression levels in SubtiExpress: sdaAA
Metabolic function and regulation of this protein in SubtiPathways:
Ala, Gly, Ser
MW, pI 30 kDa, 4.87
Gene length, protein length 900 bp, 300 aa
Immediate neighbours sdaAB, recG
Sequences Protein DNA DNA_with_flanks
Genetic context
SdaAA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SdaAA expression.png




























Categories containing this gene/protein

utilization of amino acids

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU15860

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: L-serine = pyruvate + NH3 (according to Swiss-Prot)
  • Protein family: iron-sulfur dependent L-serine dehydratase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s): iron-sulfur cluster PubMed
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References