Difference between revisions of "YceF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yceE]]'', ''[[yceG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yceE]]'', ''[[yceG]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02920 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02920 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yceF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yceF_context.gif]]

Revision as of 09:25, 14 May 2013

  • Description: general stress protein, similar to tellurium resistance protein

Gene name yceF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yceF
MW, pI 29 kDa, 7.452
Gene length, protein length 771 bp, 257 aa
Immediate neighbours yceE, yceG
Sequences Protein DNA DNA_with_flanks
Genetic context
YceF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YceF expression.png





















Categories containing this gene/protein

general stress proteins (controlled by SigB), cell envelope stress proteins (controlled by SigM, V, W, X, Y), resistance against toxic metals, membrane proteins

This gene is a member of the following regulons

SigB regulon, SigM regulon, SigW regulon, Sigx regulon

The gene

Basic information

  • Locus tag: BSU02920

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: terC family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

Warawan Eiamphungporn, John D Helmann
The Bacillus subtilis sigma(M) regulon and its contribution to cell envelope stress responses.
Mol Microbiol: 2008, 67(4);830-48
[PubMed:18179421] [WorldCat.org] [DOI] (P p)

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)

Min Cao, Phil A Kobel, Maud M Morshedi, Ming Fang Winston Wu, Chris Paddon, John D Helmann
Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches.
J Mol Biol: 2002, 316(3);443-57
[PubMed:11866510] [WorldCat.org] [DOI] (P p)

D E Taylor
Bacterial tellurite resistance.
Trends Microbiol: 1999, 7(3);111-5
[PubMed:10203839] [WorldCat.org] [DOI] (P p)