Difference between revisions of "GerKD"

From SubtiWiki
Jump to: navigation, search
m (Jstuelk moved page YczF to GerKD: 23625846)
Line 1: Line 1:
−
* '''Description:''' unknown <br/><br/>
+
* '''Description:''' D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''yczF''
+
|''gerKD''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yczF ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+
|style="background:#ABCDEF;" align="center"| '''Product''' || D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+
|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]]
 
|-
 
|-
−
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03690 yczF]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03690 gerKD]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 10.011   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 10.011   
Line 41: Line 41:
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
 
{{SubtiWiki category|[[membrane proteins]]}},
 
{{SubtiWiki category|[[membrane proteins]]}},
−
{{SubtiWiki category|[[sporulation proteins]]}}
+
{{SubtiWiki category|[[germination]]}}
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
Line 53: Line 53:
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
 +
* faster [[germination]] with the AGFK germinant mixture {{PubMed|23625846}}
 +
* higher sensitivity to AGFK germinants ([[germination]] at lower concentrations) {{PubMed|23625846}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 61: Line 63:
  
 
=== Additional information===
 
=== Additional information===
−
 
−
 
  
  
Line 106: Line 106:
 
=Expression and regulation=
 
=Expression and regulation=
  
−
* '''Operon:'''  
+
* '''Operon:''' ''[[gerKD]]'' {{PubMed|22383849}}
  
−
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 yczF] {{PubMed|22383849}}
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 gerKD] {{PubMed|22383849}}
  
−
* '''[[Sigma factor]]:'''  
+
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|23625846}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** expressed during [[sporulation]] in the forespore ([[SigG]]) {{PubMed|23625846}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
Line 137: Line 138:
  
 
=References=
 
=References=
−
 
+
<pubmed> 23625846 22383849</pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 18:31, 30 April 2013

Gene name gerKD
Synonyms yczF
Essential no
Product D protein for the GerKA-GerKB-GerKC germinant receptor
Function germination
Gene expression levels in SubtiExpress: gerKD
MW, pI 8 kDa, 10.011
Gene length, protein length 219 bp, 73 aa
Immediate neighbours yclG, gerKA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YczF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YczF expression.png















Categories containing this gene/protein

membrane proteins, germination

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU03690

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Arturo Ramirez-Peralta, Srishti Gupta, Xuan Yi Butzin, Barbara Setlow, George Korza, Marco-Antonio Leyva-Vazquez, Graham Christie, Peter Setlow
Identification of new proteins that modulate the germination of spores of bacillus species.
J Bacteriol: 2013, 195(13);3009-21
[PubMed:23625846] [WorldCat.org] [DOI] (I p)

Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849] [WorldCat.org] [DOI] (I p)

Retrieved from "https://subtiwiki.uni-goettingen.de/wiki//index.php?title=GerKD&oldid=179633"