Difference between revisions of "XlyB"
| Line 13: | Line 13: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || [[PBSX prophage]]-mediated lysis | |style="background:#ABCDEF;" align="center"|'''Function''' || [[PBSX prophage]]-mediated lysis | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12460 xlyB] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 9.802 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 9.802 | ||
| Line 21: | Line 21: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yjpA]]'', ''[[yjqA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yjpA]]'', ''[[yjqA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12460 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12460 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12460 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:xlyB_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:xlyB_context.gif]] | ||
Revision as of 12:36, 13 May 2013
- Description: N-acetylmuramoyl-L-alanine amidase
| Gene name | xlyB |
| Synonyms | yjpB |
| Essential | no |
| Product | N-acetylmuramoyl-L-alanine amidase |
| Function | PBSX prophage-mediated lysis |
| Gene expression levels in SubtiExpress: xlyB | |
| MW, pI | 33 kDa, 9.802 |
| Gene length, protein length | 951 bp, 317 aa |
| Immediate neighbours | yjpA, yjqA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell wall degradation/ turnover, phage-related functions, PBSX prophage
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU12460
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides (according to Swiss-Prot)
- Protein family: LysM repeat (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- secreted (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O34391
- KEGG entry: [2]
- E.C. number: 3.5.1.28
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information: the mRNA is very stable (half-life > 15 min) PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
