Difference between revisions of "Rho"
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=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1PVO 1PVO] (Rho from ''E. coli'') {{PubMed|12859904}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q03222 Q03222] | * '''UniProt:''' [http://www.uniprot.org/uniprot/Q03222 Q03222] | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rho_3803400_3804683_-1 rho] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rho_3803400_3804683_-1 rho] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
==Reviews== | ==Reviews== | ||
| − | <pubmed> 16946247 12887917 16946247 8576105 23347833 </pubmed> | + | <pubmed> 16946247 12887917 16946247 8576105 23347833 12887917 </pubmed> |
==Original publications== | ==Original publications== | ||
| − | <pubmed> 11566991 10027981 20075920 22383849 </pubmed> | + | <pubmed> 11566991 10027981 20075920 22383849 12859904 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 13:11, 30 January 2013
- Description: transcriptional termination protein
| Gene name | rho |
| Synonyms | |
| Essential | no |
| Product | transcriptional termination protein |
| Function | transcriptional termination |
| Gene expression levels in SubtiExpress: rho | |
| MW, pI | 48 kDa, 6.865 |
| Gene length, protein length | 1281 bp, 427 aa |
| Immediate neighbours | rpmE, glpX |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU37080
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: rho family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: Q03222
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Marc Boudvillain, Nara Figueroa-Bossi, Lionello Bossi
Terminator still moving forward: expanding roles for Rho factor.
Curr Opin Microbiol: 2013, 16(2);118-24
[PubMed:23347833]
[WorldCat.org]
[DOI]
(I p)
M Sofia Ciampi
Rho-dependent terminators and transcription termination.
Microbiology (Reading): 2006, 152(Pt 9);2515-2528
[PubMed:16946247]
[WorldCat.org]
[DOI]
(P p)
John P Richardson
Loading Rho to terminate transcription.
Cell: 2003, 114(2);157-9
[PubMed:12887917]
[WorldCat.org]
[DOI]
(P p)
J P Richardson
Structural organization of transcription termination factor Rho.
J Biol Chem: 1996, 271(3);1251-4
[PubMed:8576105]
[WorldCat.org]
[DOI]
(P p)
Original publications
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
Vitaly Epshtein, Dipak Dutta, Joseph Wade, Evgeny Nudler
An allosteric mechanism of Rho-dependent transcription termination.
Nature: 2010, 463(7278);245-9
[PubMed:20075920]
[WorldCat.org]
[DOI]
(I p)
Emmanuel Skordalakes, James M Berger
Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading.
Cell: 2003, 114(1);135-46
[PubMed:12859904]
[WorldCat.org]
[DOI]
(P p)
H Yakhnin, J E Babiarz, A V Yakhnin, P Babitzke
Expression of the Bacillus subtilis trpEDCFBA operon is influenced by translational coupling and Rho termination factor.
J Bacteriol: 2001, 183(20);5918-26
[PubMed:11566991]
[WorldCat.org]
[DOI]
(P p)
C J Ingham, J Dennis, P A Furneaux
Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis.
Mol Microbiol: 1999, 31(2);651-63
[PubMed:10027981]
[WorldCat.org]
[DOI]
(P p)
