Difference between revisions of "YonT"
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* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yonT_2219784_2219960_-1 yonT] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yonT_2219784_2219960_-1 yonT] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | ''' | + | <big>''Durand S, Gilet L, Condon C'' </big> |
| + | <big>'''The essential function of ''B. subtilis'' RNase III is to silence foreign toxin genes.''' </big> | ||
| + | <big>PLoS Genet. 2012 8(12): e1003181.</big> | ||
| + | [http://www.ncbi.nlm.nih.gov/pubmed/23300471 PubMed:23300471] | ||
<pubmed> 20156992 19210617</pubmed> | <pubmed> 20156992 19210617</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:40, 5 February 2013
- Description: toxin
| Gene name | yonT |
| Synonyms | |
| Essential | no |
| Product | toxin |
| Function | unknown |
| Gene expression levels in SubtiExpress: yonT | |
| MW, pI | 6 kDa, 12.857 |
| Gene length, protein length | 174 bp, 58 aa |
| Immediate neighbours | as-yonT, yonS |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
toxins, antitoxins and immunity against toxins, SP-beta prophage
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU21000
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: panD family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31941
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Durand S, Gilet L, Condon C The essential function of B. subtilis RNase III is to silence foreign toxin genes. PLoS Genet. 2012 8(12): e1003181. PubMed:23300471
Elizabeth M Fozo, Kira S Makarova, Svetlana A Shabalina, Natalya Yutin, Eugene V Koonin, Gisela Storz
Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families.
Nucleic Acids Res: 2010, 38(11);3743-59
[PubMed:20156992]
[WorldCat.org]
[DOI]
(I p)
Roula Daou-Chabo, Nathalie Mathy, Lionel Bénard, Ciarán Condon
Ribosomes initiating translation of the hbs mRNA protect it from 5'-to-3' exoribonucleolytic degradation by RNase J1.
Mol Microbiol: 2009, 71(6);1538-50
[PubMed:19210617]
[WorldCat.org]
[DOI]
(I p)
