Difference between revisions of "RipX"
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|style="background:#ABCDEF;" align="center"|'''Function''' || chromosome partitioning | |style="background:#ABCDEF;" align="center"|'''Function''' || chromosome partitioning | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU23510 ripX] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 10 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 10 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[drm]]'', ''[[yqzK]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[drm]]'', ''[[yqzK]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU23510 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU23510 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU23510 Advanced_DNA] |
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Revision as of 13:12, 13 May 2013
- Description: site-specific integrase/recombinase
| Gene name | ripX |
| Synonyms | ykqM |
| Essential | no |
| Product | site-specific integrase/recombinase |
| Function | chromosome partitioning |
| Gene expression levels in SubtiExpress: ripX | |
| MW, pI | 33 kDa, 10 |
| Gene length, protein length | 888 bp, 296 aa |
| Immediate neighbours | drm, yqzK |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU23510
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: resolution of chromosome dimers by site specific recombination at the dif site (located close to the terminus region on the chromosome)
- Protein family: XerD subfamily (according to Swiss-Prot)
- Paralogous protein(s): CodV
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cytoplasm (according to Swiss-Prot)
- assembles on the chromosome at the dif site throughout the cell cycle PubMed
Database entries
- Structure:
- UniProt: P46352
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Christine Kaimer, Katrin Schenk, Peter L Graumann
Two DNA translocases synergistically affect chromosome dimer resolution in Bacillus subtilis.
J Bacteriol: 2011, 193(6);1334-40
[PubMed:21239579]
[WorldCat.org]
[DOI]
(I p)
Alexandra E Bloor, Rocky M Cranenburgh
An efficient method of selectable marker gene excision by Xer recombination for gene replacement in bacterial chromosomes.
Appl Environ Microbiol: 2006, 72(4);2520-5
[PubMed:16597952]
[WorldCat.org]
[DOI]
(P p)
S A Sciochetti, P J Piggot, G W Blakely
Identification and characterization of the dif Site from Bacillus subtilis.
J Bacteriol: 2001, 183(3);1058-68
[PubMed:11208805]
[WorldCat.org]
[DOI]
(P p)
S A Sciochetti, P J Piggot, D J Sherratt, G Blakely
The ripX locus of Bacillus subtilis encodes a site-specific recombinase involved in proper chromosome partitioning.
J Bacteriol: 1999, 181(19);6053-62
[PubMed:10498718]
[WorldCat.org]
[DOI]
(P p)
