Difference between revisions of "YpsC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification
 
|style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU22170 ypsC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22170 ypsC]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.011   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.011   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypzG]]'', ''[[rnpB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypzG]]'', ''[[rnpB]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14134&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22170 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22170 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22170 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ypsC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ypsC_context.gif]]

Revision as of 13:07, 13 May 2013

  • Description: similar to SAM-dependent 23S rRNA methyltransferase

Gene name ypsC
Synonyms
Essential no
Product 23S rRNA methyltransferase
Function rRNA modification
Gene expression levels in SubtiExpress: ypsC
MW, pI 43 kDa, 8.011
Gene length, protein length 1155 bp, 385 aa
Immediate neighbours ypzG, rnpB
Sequences Protein DNA Advanced_DNA
Genetic context
YpsC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YpsC expression.png
























Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU22170

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378] [WorldCat.org] [DOI] (P p)