Difference between revisions of "XkdJ"

From SubtiWiki
Jump to: navigation, search
Line 34: Line 34:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 44: Line 40:
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[Xpf regulon]]}}
+
{{SubtiWiki regulon|[[Xpf regulon]]}},
 +
[[Efp-dependent proteins]]
  
 
=The gene=
 
=The gene=
Line 108: Line 105:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=xkdJ_1331743_1332183_1 xkdJ] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=xkdJ_1331743_1332183_1 xkdJ] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[Xpf]] {{PubMed|8083174}}
+
* '''[[Sigma factor]]:''' [[Xpf]] {{PubMed|8083174}}
 
   
 
   
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 115: Line 112:
  
 
* '''Additional information:'''
 
* '''Additional information:'''
 +
** [[translation]] is likely to require [[Efp]] due to the presence of several consecutive proline residues {{PubMed|23239624,23239623}}
  
 
=Biological materials =
 
=Biological materials =

Revision as of 19:25, 29 April 2013

  • Description: PBSX prophage

Gene name xkdJ
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: xkdJ
MW, pI 16 kDa, 4.873
Gene length, protein length 438 bp, 146 aa
Immediate neighbours xkdI, ykzM
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
XkdJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
XkdJ expression.png















Categories containing this gene/protein

PBSX prophage

This gene is a member of the following regulons

Xpf regulon, Efp-dependent proteins

The gene

Basic information

  • Locus tag: BSU12640

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • translation is likely to require Efp due to the presence of several consecutive proline residues PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

G E McDonnell, H Wood, K M Devine, D J McConnell
Genetic control of bacterial suicide: regulation of the induction of PBSX in Bacillus subtilis.
J Bacteriol: 1994, 176(18);5820-30
[PubMed:8083174] [WorldCat.org] [DOI] (P p)

H E Wood, M T Dawson, K M Devine, D J McConnell
Characterization of PBSX, a defective prophage of Bacillus subtilis.
J Bacteriol: 1990, 172(5);2667-74
[PubMed:2110147] [WorldCat.org] [DOI] (P p)