Difference between revisions of "YloN"
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|style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15750 yloN] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 6.788 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 6.788 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloM]]'', ''[[prpC]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloM]]'', ''[[prpC]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15750 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15750 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15750 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yloN_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yloN_context.gif]] | ||
Revision as of 12:48, 13 May 2013
- Description: similar to rRNA adenosine methyltransferase for modification of 23S rRNA
| Gene name | yloN |
| Synonyms | |
| Essential | no |
| Product | rRNA methyltransferase |
| Function | rRNA modification |
| Gene expression levels in SubtiExpress: yloN | |
| MW, pI | 41 kDa, 6.788 |
| Gene length, protein length | 1089 bp, 363 aa |
| Immediate neighbours | yloM, prpC |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU15750
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: RlmN family (according to Swiss-Prot), SAM enzyme superfamily
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O34617
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Perry A Frey, Adrian D Hegeman, Frank J Ruzicka
The Radical SAM Superfamily.
Crit Rev Biochem Mol Biol: 2008, 43(1);63-88
[PubMed:18307109]
[WorldCat.org]
[DOI]
(I p)
Seok-Ming Toh, Liqun Xiong, Taeok Bae, Alexander S Mankin
The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA.
RNA: 2008, 14(1);98-106
[PubMed:18025251]
[WorldCat.org]
[DOI]
(I p)
