Difference between revisions of "YdaT"

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|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol  stress and low temperatures
 
|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol  stress and low temperatures
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04380 ydaT]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04380 ydaT]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 5.967   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 5.967   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydaS]]'', ''[[ydbA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydaS]]'', ''[[ydbA]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12245&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04380 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04380 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04380 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ydaT_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydaT_context.gif]]

Revision as of 12:10, 13 May 2013

  • Description: general stress protein, survival of ethanol stress and low temperatures

Gene name ydaT
Synonyms
Essential no
Product unknown
Function survival of ethanol stress and low temperatures
Gene expression levels in SubtiExpress: ydaT
MW, pI 16 kDa, 5.967
Gene length, protein length 450 bp, 150 aa
Immediate neighbours ydaS, ydbA
Sequences Protein DNA Advanced_DNA
Genetic context
YdaT context.gif
This image was kindly provided by SubtiList
[None Expression at a glance]   PubMed
YdaT expression.png















Categories containing this gene/protein

general stress proteins (controlled by SigB)

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU04380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by stress (SigB) PubMed
    • strongly induced in response to glucose starvation in M9 medium PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed