Difference between revisions of "RsfA"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of expression of [[SigF]]-dependent genes | |style="background:#ABCDEF;" align="center"|'''Function''' || control of expression of [[SigF]]-dependent genes | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37620 rsfA] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 5.13 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 5.13 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywzC]]'', ''[[ywfM]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywzC]]'', ''[[ywfM]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37620 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:rsfA_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:rsfA_context.gif]] | ||
Revision as of 14:07, 13 May 2013
- Description: probable regulator of transcription of SigF-dependent genes
| Gene name | rsfA |
| Synonyms | ywfN, ipa-92r |
| Essential | no |
| Product | regulator of SigF activity |
| Function | control of expression of SigF-dependent genes |
| Gene expression levels in SubtiExpress: rsfA | |
| MW, pI | 29 kDa, 5.13 |
| Gene length, protein length | 774 bp, 258 aa |
| Immediate neighbours | ywzC, ywfM |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sigma factors and their control, sporulation proteins
This gene is a member of the following regulons
RsfA regulon, SigF regulon, SigG regulon
The RsfA regulon:
The gene
Basic information
- Locus tag: BSU37620
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- forespore (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P39650
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: rsfA PubMed
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Stephanie T Wang, Barbara Setlow, Erin M Conlon, Jessica L Lyon, Daisuke Imamura, Tsutomu Sato, Peter Setlow, Richard Losick, Patrick Eichenberger
The forespore line of gene expression in Bacillus subtilis.
J Mol Biol: 2006, 358(1);16-37
[PubMed:16497325]
[WorldCat.org]
[DOI]
(P p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147]
[WorldCat.org]
[DOI]
(P p)
L J Wu, J Errington
Identification and characterization of a new prespore-specific regulatory gene, rsfA, of Bacillus subtilis.
J Bacteriol: 2000, 182(2);418-24
[PubMed:10629188]
[WorldCat.org]
[DOI]
(P p)
P Glaser, F Kunst, M Arnaud, M P Coudart, W Gonzales, M F Hullo, M Ionescu, B Lubochinsky, L Marcelino, I Moszer
Bacillus subtilis genome project: cloning and sequencing of the 97 kb region from 325 degrees to 333 degrees.
Mol Microbiol: 1993, 10(2);371-84
[PubMed:7934828]
[WorldCat.org]
(P p)
