Difference between revisions of "YdaO"

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(Biological materials)
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* '''Mutant:'''
 
* '''Mutant:'''
** 1A688 ( ''ydaO''::''erm''), {{PubMed| }}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A688&Search=1A688 BGSC]
 
 
** 1A688 ( ''ydaO''::''erm''), {{PubMed| }}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A688&Search=1A688 BGSC]
 
** 1A688 ( ''ydaO''::''erm''), {{PubMed| }}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A688&Search=1A688 BGSC]
  

Revision as of 15:26, 23 October 2012

  • Description: unknown

Gene name ydaO
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydaO
MW, pI 66 kDa, 9.929
Gene length, protein length 1821 bp, 607 aa
Immediate neighbours ydaN, mutT
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdaO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdaO expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

YdaO riboswitch

The gene

Basic information

  • Locus tag: BSU04320

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Kirsten F Block, Ming C Hammond, Ronald R Breaker
Evidence for widespread gene control function by the ydaO riboswitch candidate.
J Bacteriol: 2010, 192(15);3983-9
[PubMed:20511502] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A: 2004, 101(17);6421-6
[PubMed:15096624] [WorldCat.org] [DOI] (P p)