Difference between revisions of "YhfR"
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|style="background:#ABCDEF;" align="center"|'''Function''' || isoprenoid biosynthesis | |style="background:#ABCDEF;" align="center"|'''Function''' || isoprenoid biosynthesis | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10340 yhfR] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 5.164 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 5.164 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhfQ]]'', ''[[yhfS]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhfQ]]'', ''[[yhfS]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10340 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10340 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10340 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yhfR_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yhfR_context.gif]] | ||
Revision as of 12:29, 13 May 2013
- Description: phosphatase involved in isopentenol (isoprenoid) biosynthesis
| Gene name | yhfR |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | isoprenoid biosynthesis |
| Gene expression levels in SubtiExpress: yhfR | |
| MW, pI | 21 kDa, 5.164 |
| Gene length, protein length | 579 bp, 193 aa |
| Immediate neighbours | yhfQ, yhfS |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU10340
Phenotypes of a mutant
no detectable phenotype PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: phosphatase involved in isopentenol (isoprenoid) biosynthesis
- Protein family: GpmB subfamily (according to Swiss-Prot) similar to 2,3-diphosphoglycerate-dependent phosphoglycerate mutases PubMed
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: O07617
- KEGG entry: [2]
- E.C. number:
Additional information
The gene is annotated in KEGG as an ortholog of phosphoglycerate mutase (PGM) EC 5.4.2.1. In MetaCyc the protein is marked as “similar to phosphoglycerate mutase”. No EC annotation is available in Swiss-Prot. Pearson et al. (PubMed) demonstrated that yhfR is non-essential for growth, sporulation, and spore germination. They also purified the gene, expressed it in B. subtilis but were not able to detect PGM activity in B. subtilis. PubMed
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information: weakly expressed PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
