Difference between revisions of "TsaB"

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* '''Description:''' similar to glycoprotein endopeptidase <br/><br/>
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* '''Description:''' cofactor of the [[Gcp]] tRNA modification enzyme <br/><br/>
 
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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
 
{{SubtiWiki category|[[essential genes]]}},
 
{{SubtiWiki category|[[essential genes]]}},
{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}}
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{{SubtiWiki category|[[translation]]}}
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
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=== Additional information===
 
=== Additional information===
 
 
  
  
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* '''[[SubtInteract|Interactions]]:'''
 
* '''[[SubtInteract|Interactions]]:'''
 
** the corresponding ''E. coli'' protein interacts with the proteins corresponding to [[YdiB]] and [[Gcp]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19376873 PubMed]
 
** the corresponding ''E. coli'' protein interacts with the proteins corresponding to [[YdiB]] and [[Gcp]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19376873 PubMed]
 +
** [[Gcp]]-[[YdiC]] {{PubMed|21285948}}
  
 
* '''[[Localization]]:'''
 
* '''[[Localization]]:'''

Revision as of 16:15, 28 August 2012

  • Description: cofactor of the Gcp tRNA modification enzyme

Gene name ydiC
Synonyms
Essential yes PubMed
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydiC
Interactions involving this protein in SubtInteract: YdiC
MW, pI 25 kDa, 5.762
Gene length, protein length 687 bp, 229 aa
Immediate neighbours ydiB, ydiD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YdiC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdiC expression.png















Categories containing this gene/protein

essential genes, translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU05920

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: the corresponding E. coli protein is involved in proteolysis of the Gcp homolog PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References