Difference between revisions of "YcnD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || delivery of FMN to enzymes
 
|style="background:#ABCDEF;" align="center"|'''Function''' || delivery of FMN to enzymes
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03860 ycnD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03860 ycnD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.081   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.081   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnC]]'', ''[[ycnE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnC]]'', ''[[ycnE]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12194&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03860 Advanced_DNA]
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ycnD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ycnD_context.gif]]

Revision as of 12:08, 13 May 2013

  • Description: NADPH-FMN oxidoreductase, delivers reduced FMN to enzymes that require the reduced cofactor for activity

Gene name ycnD
Synonyms
Essential no
Product NADPH-FMN oxidoreductase
Function delivery of FMN to enzymes
Gene expression levels in SubtiExpress: ycnD
MW, pI 27 kDa, 5.081
Gene length, protein length 747 bp, 249 aa
Immediate neighbours ycnC, ycnE
Sequences Protein DNA Advanced_DNA
Genetic context
YcnD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcnD expression.png
























Categories containing this gene/protein

electron transport/ other

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU03860

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: flavin oxidoreductase frp family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Van Duy Nguyen, Carmen Wolf, Ulrike Mäder, Michael Lalk, Peter Langer, Ulrike Lindequist, Michael Hecker, Haike Antelmann
Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis.
Proteomics: 2007, 7(9);1391-408
[PubMed:17407181] [WorldCat.org] [DOI] (P p)

Alexander Morokutti, Andrzej Lyskowski, Sonja Sollner, Eva Pointner, Teresa B Fitzpatrick, Christoph Kratky, Karl Gruber, Peter Macheroux
Structure and function of YcnD from Bacillus subtilis, a flavin-containing oxidoreductase.
Biochemistry: 2005, 44(42);13724-33
[PubMed:16229462] [WorldCat.org] [DOI] (P p)