Difference between revisions of "YcnD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || delivery of FMN to enzymes | |style="background:#ABCDEF;" align="center"|'''Function''' || delivery of FMN to enzymes | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03860 ycnD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.081 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.081 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnC]]'', ''[[ycnE]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnC]]'', ''[[ycnE]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03860 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ycnD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ycnD_context.gif]] | ||
Revision as of 12:08, 13 May 2013
- Description: NADPH-FMN oxidoreductase, delivers reduced FMN to enzymes that require the reduced cofactor for activity
| Gene name | ycnD |
| Synonyms | |
| Essential | no |
| Product | NADPH-FMN oxidoreductase |
| Function | delivery of FMN to enzymes |
| Gene expression levels in SubtiExpress: ycnD | |
| MW, pI | 27 kDa, 5.081 |
| Gene length, protein length | 747 bp, 249 aa |
| Immediate neighbours | ycnC, ycnE |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU03860
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: flavin oxidoreductase frp family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 1ZCH
- UniProt: P94424
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- induced by chromanon PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Van Duy Nguyen, Carmen Wolf, Ulrike Mäder, Michael Lalk, Peter Langer, Ulrike Lindequist, Michael Hecker, Haike Antelmann
Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis.
Proteomics: 2007, 7(9);1391-408
[PubMed:17407181]
[WorldCat.org]
[DOI]
(P p)
Alexander Morokutti, Andrzej Lyskowski, Sonja Sollner, Eva Pointner, Teresa B Fitzpatrick, Christoph Kratky, Karl Gruber, Peter Macheroux
Structure and function of YcnD from Bacillus subtilis, a flavin-containing oxidoreductase.
Biochemistry: 2005, 44(42);13724-33
[PubMed:16229462]
[WorldCat.org]
[DOI]
(P p)
