Difference between revisions of "RpmD"

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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
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|style="background:#ABCDEF;" align="center"| '''Essential''' || yes {{PubMed|23002217,12682299}}
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] L30 (BL27)
 
|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] L30 (BL27)
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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
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essential {{PubMed|23002217,12682299}}
  
 
=== Database entries ===
 
=== Database entries ===
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=References=
 
=References=
 
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'''Additional publications:''' {{PubMed|23002217}}
 
<pubmed>8635744,9371452,11948165 ,19653700 </pubmed>
 
<pubmed>8635744,9371452,11948165 ,19653700 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 10:47, 26 September 2012

Gene name rpmD
Synonyms
Essential yes PubMed
Product ribosomal protein L30 (BL27)
Function translation
Gene expression levels in SubtiExpress: rpmD
Interactions involving this protein in SubtInteract: RpmD
MW, pI 6 kDa, 10.799
Gene length, protein length 177 bp, 59 aa
Immediate neighbours rpsE, rplO
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RpmD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RpmD expression.png















Categories containing this gene/protein

translation, essential genes

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01340

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
    • SigA two promoters, about 140bp and 200bp upstream of the start codon PubMed
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed