Difference between revisions of "RpsJ"

From SubtiWiki
Jump to: navigation, search
Line 8: Line 8:
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''tetA ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''tetA ''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes {{PubMed|23002217,12682299}}
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] S10 (BS13)
 
|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] S10 (BS13)
Line 37: Line 37:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 59: Line 55:
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+
essential {{PubMed|23002217,12682299}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 149: Line 145:
 
<pubmed> 15621428 </pubmed>
 
<pubmed> 15621428 </pubmed>
 
==Original publications==
 
==Original publications==
 +
'''Additional publications:''' {{PubMed|23002217}}
 
<pubmed> 19653700, 9371452 11948165 8635744</pubmed>
 
<pubmed> 19653700, 9371452 11948165 8635744</pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 11:30, 26 September 2012

Gene name rpsJ
Synonyms tetA
Essential yes PubMed
Product ribosomal protein S10 (BS13)
Function translation
Gene expression levels in SubtiExpress: rpsJ
Interactions involving this protein in SubtInteract: RpsJ
MW, pI 11 kDa, 10.207
Gene length, protein length 306 bp, 102 aa
Immediate neighbours ybaC, rplC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RpsJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RpsJ expression.png















Categories containing this gene/protein

translation, essential genes, universally conserved proteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01150

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
    • SigA two promoters, about 140bp and 200bp upstream of the start codon PubMed
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Original publications

Additional publications: PubMed