Difference between revisions of "YacF"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA maturation | |style="background:#ABCDEF;" align="center"|'''Function''' || tRNA maturation | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00810 yacF] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/folate_biosynthesis.html Folate]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/folate_biosynthesis.html Folate]''' | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yazB]]'', ''[[lysS]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yazB]]'', ''[[lysS]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00810 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00810 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00810 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yacF_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yacF_context.gif]] | ||
Revision as of 11:56, 13 May 2013
- Description: putative tRNA-dihydrouridine synthase B
| Gene name | yacF |
| Synonyms | dusB, dus1 |
| Essential | no |
| Product | putative tRNA-dihydrouridine synthase B |
| Function | tRNA maturation |
| Gene expression levels in SubtiExpress: yacF | |
| Metabolic function and regulation of this protein in SubtiPathways: Folate | |
| MW, pI | 36 kDa, 7.868 |
| Gene length, protein length | 999 bp, 333 aa |
| Immediate neighbours | yazB, lysS |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00810
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: dus family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: P37567
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information: the mRNA is very stable (half-life > 15 min) PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
