Difference between revisions of "RplR"

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|colspan="2" | '''Genetic context''' <br/> [[Image:rplR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rplR_context.gif]]
 
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rplR_142974_143336_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rplR_expression.png|500px]]
 
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Revision as of 13:14, 8 August 2012

Gene name rplR
Synonyms
Essential yes PubMed
Product ribosomal protein L18
Function translation
Gene expression levels in SubtiExpress: rplR
Interactions involving this protein in SubtInteract: RplR
MW, pI 12 kDa, 10.46
Gene length, protein length 360 bp, 120 aa
Immediate neighbours rplF, rpsE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RplR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RplR expression.png
























Categories containing this gene/protein

translation, essential genes, universally conserved proteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01320

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1OVY (Geobacillus stearothermophilus)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
    • SigA two promoters, about 140bp and 200bp upstream of the start codon PubMed
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References