Difference between revisions of "RapD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]]-dependent gene expression | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]]-dependent gene expression | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36380 rapD] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapD RapD] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapD RapD] | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywpB]]'', ''[[flhP]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywpB]]'', ''[[flhP]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36380 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36380 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36380 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:rapD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:rapD_context.gif]] | ||
Revision as of 14:03, 13 May 2013
- Description: response regulator aspartate phosphatase, controls ComA activity
| Gene name | rapD |
| Synonyms | ywpA |
| Essential | no |
| Product | response regulator aspartate phosphatase |
| Function | control of ComA-dependent gene expression |
| Gene expression levels in SubtiExpress: rapD | |
| Interactions involving this protein in SubtInteract: RapD | |
| MW, pI | 41 kDa, 7.691 |
| Gene length, protein length | 1062 bp, 354 aa |
| Immediate neighbours | ywpB, flhP |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
genetic competence, protein modification, transcription factors and their control, quorum sensing, cell envelope stress proteins (controlled by SigM, V, W, X, Y)
This gene is a member of the following regulons
RghR regulon, SigM regulon, SigX regulon
The gene
Basic information
- Locus tag: BSU36380
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Protein family: RAP family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P94583
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Warawan Eiamphungporn, John D Helmann
The Bacillus subtilis sigma(M) regulon and its contribution to cell envelope stress responses.
Mol Microbiol: 2008, 67(4);830-48
[PubMed:18179421]
[WorldCat.org]
[DOI]
(P p)
Mitsuo Ogura, Yasutaro Fujita
Bacillus subtilis rapD, a direct target of transcription repression by RghR, negatively regulates srfA expression.
FEMS Microbiol Lett: 2007, 268(1);73-80
[PubMed:17227471]
[WorldCat.org]
[DOI]
(P p)
X Huang, J D Helmann
Identification of target promoters for the Bacillus subtilis sigma X factor using a consensus-directed search.
J Mol Biol: 1998, 279(1);165-73
[PubMed:9636707]
[WorldCat.org]
[DOI]
(P p)
