Difference between revisions of "RapD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]]-dependent gene expression
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]]-dependent gene expression
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU36380 rapD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36380 rapD]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapD RapD]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapD RapD]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywpB]]'', ''[[flhP]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywpB]]'', ''[[flhP]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15655&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36380 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36380 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36380 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rapD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rapD_context.gif]]

Revision as of 14:03, 13 May 2013

Gene name rapD
Synonyms ywpA
Essential no
Product response regulator aspartate phosphatase
Function control of ComA-dependent gene expression
Gene expression levels in SubtiExpress: rapD
Interactions involving this protein in SubtInteract: RapD
MW, pI 41 kDa, 7.691
Gene length, protein length 1062 bp, 354 aa
Immediate neighbours ywpB, flhP
Sequences Protein DNA Advanced_DNA
Genetic context
RapD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RapD expression.png
























Categories containing this gene/protein

genetic competence, protein modification, transcription factors and their control, quorum sensing, cell envelope stress proteins (controlled by SigM, V, W, X, Y)

This gene is a member of the following regulons

RghR regulon, SigM regulon, SigX regulon

The gene

Basic information

  • Locus tag: BSU36380

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: control of ComA-dependent gene expression PubMed
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References