Difference between revisions of "CycB"
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1263 bp, 421 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1263 bp, 421 aa | ||
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| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ganP]]'', ''[[lacR]]'' |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15421]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15421]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | ||
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__TOC__ | __TOC__ | ||
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===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * a ''[[cycB]]-[[ganP]]-[[ganQ]]-[[ganA]]-[[ganB]]'' mutant is impaired in the utilization of galactan {{PubMed|22893383}} | ||
=== Database entries === | === Database entries === | ||
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=== Additional information=== | === Additional information=== | ||
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* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
| − | ** ([[ | + | ** ([[GanP]]-[[GanQ]])-[[CycB]] {{PubMed|10092453}} |
* '''[[Localization]]:''' cell membrane (via [[YvfL]]-[[YvfM]]) {{PubMed|10092453}} | * '''[[Localization]]:''' cell membrane (via [[YvfL]]-[[YvfM]]) {{PubMed|10092453}} | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[cycB]]-[[ | + | * '''Operon:''' ''[[cycB]]-[[ganP]]-[[ganQ]]-[[ganA]]-[[ganB]]'' {{PubMed|9287030}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cycB_3507253_3508518_-1 cycB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cycB_3507253_3508518_-1 cycB] {{PubMed|22383849}} | ||
Revision as of 13:41, 16 August 2012
- Description: cyclodextrin/maltodextrin ABC transporter, binding protein
| Gene name | cycB |
| Synonyms | yvfK |
| Essential | no |
| Product | cyclodextrin/maltodextrin ABC transporter, binding protein |
| Function | maltodextrin utilization |
| Gene expression levels in SubtiExpress: cycB | |
| Interactions involving this protein in SubtInteract: CycB | |
| MW, pI | 45 kDa, 5.441 |
| Gene length, protein length | 1263 bp, 421 aa |
| Immediate neighbours | ganP, lacR |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
ABC transporters, utilization of specific carbon sources, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU34160
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: bacterial solute-binding protein 1 family (according to Swiss-Prot)
- Paralogous protein(s): MdxE
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane (via YvfL-YvfM) PubMed
Database entries
- Structure:
- UniProt: O07009
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
