Difference between revisions of "YurI"
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|style="background:#ABCDEF;" align="center"|'''Function''' || extracellular RNA degradation | |style="background:#ABCDEF;" align="center"|'''Function''' || extracellular RNA degradation | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32540 yurI] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 4.87 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 4.87 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pucF]]'', ''[[yurJ]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pucF]]'', ''[[yurJ]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU32540 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU32540 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU32540 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yurI_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yurI_context.gif]] | ||
Revision as of 13:47, 13 May 2013
- Description: ribonuclease, extracellular RNase Bsn
| Gene name | yurI |
| Synonyms | |
| Essential | no |
| Product | extracellular RNase Bsn |
| Function | extracellular RNA degradation |
| Gene expression levels in SubtiExpress: yurI | |
| MW, pI | 31 kDa, 4.87 |
| Gene length, protein length | 864 bp, 288 aa |
| Immediate neighbours | pucF, yurJ |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU32540
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: extracellular (signal peptide) PubMed
Database entries
- Structure:
- UniProt: O32150
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: yurI PubMed
- Sigma factor:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Christian Degering, Thorsten Eggert, Michael Puls, Johannes Bongaerts, Stefan Evers, Karl-Heinz Maurer, Karl-Erich Jaeger
Optimization of protease secretion in Bacillus subtilis and Bacillus licheniformis by screening of homologous and heterologous signal peptides.
Appl Environ Microbiol: 2010, 76(19);6370-6
[PubMed:20709850]
[WorldCat.org]
[DOI]
(I p)
Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862]
[WorldCat.org]
[DOI]
(I p)
Nicholas E E Allenby, Nicola O'Connor, Zoltán Prágai, Alan C Ward, Anil Wipat, Colin R Harwood
Genome-wide transcriptional analysis of the phosphate starvation stimulon of Bacillus subtilis.
J Bacteriol: 2005, 187(23);8063-80
[PubMed:16291680]
[WorldCat.org]
[DOI]
(P p)
Ciarán Condon, Harald Putzer
The phylogenetic distribution of bacterial ribonucleases.
Nucleic Acids Res: 2002, 30(24);5339-46
[PubMed:12490701]
[WorldCat.org]
[DOI]
(I p)
A Nakamura, Y Koide, H Miyazaki, A Kitamura, H Masaki, T Beppu, T Uozumi
Gene cloning and characterization of a novel extracellular ribonuclease of Bacillus subtilis.
Eur J Biochem: 1992, 209(1);121-7
[PubMed:1396690]
[WorldCat.org]
[DOI]
(P p)
