Difference between revisions of "YtcC"
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| − | * '''Description:''' sporulation protein, similar to lipopolysaccharide N-acetylglucosaminyltransferase <br/><br/> | + | * '''Description:''' [[sporulation]] protein, similar to lipopolysaccharide N-acetylglucosaminyltransferase <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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| − | |style="background:#ABCDEF;" align="center"| '''Product''' || sporulation protein | + | |style="background:#ABCDEF;" align="center"| '''Product''' || [[sporulation]] protein |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || lipopolysaccharide biosynthesis | |style="background:#ABCDEF;" align="center"|'''Function''' || lipopolysaccharide biosynthesis | ||
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<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
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| − | |||
| − | |||
| − | |||
<br/><br/> | <br/><br/> | ||
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | {{SubtiWiki regulon|[[SigK regulon]]}} | + | {{SubtiWiki regulon|[[SigK regulon]]}}, |
| + | [[Efp-dependent proteins]] | ||
=The gene= | =The gene= | ||
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* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytcC_3157961_3159184_1 ytcC] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytcC_3157961_3159184_1 ytcC] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigK]] {{PubMed|15699190,12480901}} | + | * '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190,12480901}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Additional information:''' | * '''Additional information:''' | ||
| + | ** [[translation]] is likely to require [[Efp]] due to the presence of several consecutive proline residues {{PubMed|23239624,23239623}} | ||
| + | |||
=Biological materials = | =Biological materials = | ||
Revision as of 19:48, 29 April 2013
- Description: sporulation protein, similar to lipopolysaccharide N-acetylglucosaminyltransferase
| Gene name | ytcC |
| Synonyms | |
| Essential | no |
| Product | sporulation protein |
| Function | lipopolysaccharide biosynthesis |
| Gene expression levels in SubtiExpress: ytcC | |
| MW, pI | 45 kDa, 9.588 |
| Gene length, protein length | 1221 bp, 407 aa |
| Immediate neighbours | ytcB, ytxO |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
SigK regulon, Efp-dependent proteins
The gene
Basic information
- Locus tag: BSU30880
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): CotSA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34413
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
- translation is likely to require Efp due to the presence of several consecutive proline residues PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
