Difference between revisions of "TrmK"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU25180 trmK] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.272 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 5.272 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqfO]]'', ''[[cccA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqfO]]'', ''[[cccA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU25180 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU25180 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU25180 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yqfN_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yqfN_context.gif]] | ||
Revision as of 13:19, 13 May 2013
- Description: tRNA:m1A22 methyl transferase
| Gene name | trmK |
| Synonyms | yqfN |
| Essential | no |
| Product | tRNA:m1A22 methyl transferase |
| Function | tRNA modification |
| Gene expression levels in SubtiExpress: trmK | |
| MW, pI | 23 kDa, 5.272 |
| Gene length, protein length | 648 bp, 216 aa |
| Immediate neighbours | yqfO, cccA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification: phosphorylation on Ser-48 PubMed
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P54471
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Martine Roovers, Katarzyna H Kaminska, Karolina L Tkaczuk, Daniel Gigot, Louis Droogmans, Janusz M Bujnicki
The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK).
Nucleic Acids Res: 2008, 36(10);3252-62
[PubMed:18420655]
[WorldCat.org]
[DOI]
(I p)
Boris Macek, Ivan Mijakovic, Jesper V Olsen, Florian Gnad, Chanchal Kumar, Peter R Jensen, Matthias Mann
The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.
Mol Cell Proteomics: 2007, 6(4);697-707
[PubMed:17218307]
[WorldCat.org]
[DOI]
(P p)
